STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479452Unc-13 homolog A. (1870 aa)    
Predicted Functional Partners:
LOC103472577
Uncharacterized protein.
    
0.996
RIMS2
Regulating synaptic membrane exocytosis 2.
    
0.996
LOC103475843
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 
 0.664
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 
 0.664
LOC103463355
TFIIS N-terminal domain-containing protein.
   
  
 0.652
TNPO2
Transportin 2.
   
  
 0.651
TNPO2-2
Transportin 2.
   
  
 0.651
LOC103463799
Solute carrier family 35 member D1a.
   
  
 0.650
KCNN1
Potassium calcium-activated channel subfamily N member 1.
   
  
 0.648
mast3
Microtubule associated serine/threonine kinase 3b.
      
 0.643
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.