STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsr3Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis. (290 aa)    
Predicted Functional Partners:
mettl6
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.816
tsr2
TSR2 ribosome maturation factor.
   
  
 0.801
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.701
tp53rk
TP53 regulating kinase.
 
      0.677
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
  
 0.662
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
  
 0.650
dpy19l3
Dpy-19 like C-mannosyltransferase 3.
      
 0.646
dpy19l1
Dpy-19-like 1, like (H. sapiens).
      
 0.646
trmt12
tRNA methyltransferase 12 homolog.
   
  
 0.644
dus2
Dihydrouridine synthase 2.
   
  
 0.633
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.