STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsf2bpHeat shock transcription factor 2 binding protein. (339 aa)    
Predicted Functional Partners:
brca2
BRCA2 DNA repair associated.
    
 
 0.906
PNMT
Phenylethanolamine N-methyltransferase.
      
 0.681
pnmt
Uncharacterized protein.
      
 0.681
swsap1
SWIM-type zinc finger 7 associated protein 1.
      
 0.569
LOC103464578
Synaptonemal complex central element protein 2.
      
 0.549
tmem183a
Transmembrane protein 183A.
      
 0.549
spata22
Spermatogenesis associated 22.
      
 0.549
CLSPN
Claspin.
      
 0.549
haus8
Uncharacterized protein.
      
 0.549
rpa3
Replication protein A3.
      
 0.549
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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