STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popdc3Popeye domain containing 3. (288 aa)    
Predicted Functional Partners:
LOC103475949
Coagulation factor XIII, A1 polypeptide b.
      
 0.513
ildr2
Immunoglobulin-like domain containing receptor 2.
      
 0.499
LOC103471985
Phosphatase and actin regulator 4a.
      
 0.499
pop4
Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.
      
 0.471
Hsf5
HSF_DOMAIN domain-containing protein.
      
 0.442
tbccd1
TBCC domain containing 1.
      
 0.440
pop5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
      
 0.440
dnajb13
DnaJ heat shock protein family (Hsp40) member B13.
      
 0.440
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.439
tmem161a
Transmembrane protein 161A.
      
 0.436
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.