OSBPL10 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OSBPL10

Oxysterol-binding protein; Belongs to the OSBP family. (789 aa)

Predicted Functional Partners:

osbpl9

0.759

Katnal2

0.631

rhoh

0.465

rhoq

0.465

uaca

0.454

fam91a1

0.451

wdr11

0.450

tmem59

0.450

atad1

0.445

ENSPREP00000004746

0.438

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004746	OSBPL10	ENSPREP00000004746	ENSPREP00000026717	V-SNARE coiled-coil homology domain-containing protein.	Oxysterol-binding protein; Belongs to the OSBP family.	0.438
ENSPREP00000004746	rhoh	ENSPREP00000004746	ENSPREP00000011426	V-SNARE coiled-coil homology domain-containing protein.	Ras homolog family member H.	0.541
ENSPREP00000004746	rhoq	ENSPREP00000004746	ENSPREP00000016017	V-SNARE coiled-coil homology domain-containing protein.	Ras homolog family member Q.	0.541
ENSPREP00000004746	tmem59	ENSPREP00000004746	ENSPREP00000017328	V-SNARE coiled-coil homology domain-containing protein.	Transmembrane protein 59.	0.505
ENSPREP00000004746	uaca	ENSPREP00000004746	ENSPREP00000011667	V-SNARE coiled-coil homology domain-containing protein.	Uveal autoantigen with coiled-coil domains and ankyrin repeats b.	0.507
Katnal2	OSBPL10	ENSPREP00000007118	ENSPREP00000026717	Katanin p60 subunit A-like 2.	Oxysterol-binding protein; Belongs to the OSBP family.	0.631
Katnal2	atad1	ENSPREP00000007118	ENSPREP00000002374	Katanin p60 subunit A-like 2.	ATPase family AAA domain containing 1b; Belongs to the AAA ATPase family.	0.425
Katnal2	fam91a1	ENSPREP00000007118	ENSPREP00000010044	Katanin p60 subunit A-like 2.	Family with sequence similarity 91 member A1.	0.403
Katnal2	osbpl9	ENSPREP00000007118	ENSPREP00000026944	Katanin p60 subunit A-like 2.	Oxysterol-binding protein; Belongs to the OSBP family.	0.631
OSBPL10	ENSPREP00000004746	ENSPREP00000026717	ENSPREP00000004746	Oxysterol-binding protein; Belongs to the OSBP family.	V-SNARE coiled-coil homology domain-containing protein.	0.438
OSBPL10	Katnal2	ENSPREP00000026717	ENSPREP00000007118	Oxysterol-binding protein; Belongs to the OSBP family.	Katanin p60 subunit A-like 2.	0.631
OSBPL10	atad1	ENSPREP00000026717	ENSPREP00000002374	Oxysterol-binding protein; Belongs to the OSBP family.	ATPase family AAA domain containing 1b; Belongs to the AAA ATPase family.	0.445
OSBPL10	fam91a1	ENSPREP00000026717	ENSPREP00000010044	Oxysterol-binding protein; Belongs to the OSBP family.	Family with sequence similarity 91 member A1.	0.451
OSBPL10	osbpl9	ENSPREP00000026717	ENSPREP00000026944	Oxysterol-binding protein; Belongs to the OSBP family.	Oxysterol-binding protein; Belongs to the OSBP family.	0.759
OSBPL10	rhoh	ENSPREP00000026717	ENSPREP00000011426	Oxysterol-binding protein; Belongs to the OSBP family.	Ras homolog family member H.	0.465
OSBPL10	rhoq	ENSPREP00000026717	ENSPREP00000016017	Oxysterol-binding protein; Belongs to the OSBP family.	Ras homolog family member Q.	0.465
OSBPL10	tmem59	ENSPREP00000026717	ENSPREP00000017328	Oxysterol-binding protein; Belongs to the OSBP family.	Transmembrane protein 59.	0.450
OSBPL10	uaca	ENSPREP00000026717	ENSPREP00000011667	Oxysterol-binding protein; Belongs to the OSBP family.	Uveal autoantigen with coiled-coil domains and ankyrin repeats b.	0.454
OSBPL10	wdr11	ENSPREP00000026717	ENSPREP00000014204	Oxysterol-binding protein; Belongs to the OSBP family.	WD repeat domain 11.	0.450
atad1	Katnal2	ENSPREP00000002374	ENSPREP00000007118	ATPase family AAA domain containing 1b; Belongs to the AAA ATPase family.	Katanin p60 subunit A-like 2.	0.425