STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kinKin17 DNA and RNA binding protein. (396 aa)    
Predicted Functional Partners:
mettl22
Methyltransferase like 22.
    
 0.912
sf3a2
Splicing factor 3a, subunit 2.
    
 
 0.838
sf3b1
Splicing factor 3b, subunit 1.
    
   0.836
sf3b3
Splicing factor 3b, subunit 3.
    
   0.836
sf3a3
Splicing factor 3a, subunit 3.
    
 
 0.835
prpf38a
Pre-mRNA processing factor 38A.
   
   0.752
ENSPREP00000025430
BUD13 homolog.
   
   0.751
ENSPREP00000004346
Uncharacterized protein.
   
   0.742
Rbmx2
Uncharacterized protein.
   
   0.742
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
   0.734
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.