STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmf1TATA element modulatory factor 1. (1150 aa)    
Predicted Functional Partners:
gcc1
GRIP and coiled-coil domain containing 1.
     
 0.756
vps52
VPS52 subunit of GARP complex.
     
 0.740
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.730
vps54
VPS54 subunit of GARP complex.
   
 
 0.728
vps51
VPS51 subunit of GARP complex.
     
 0.719
cog7
Component of oligomeric golgi complex 7.
     
 0.711
vps53
VPS53 subunit of GARP complex.
     
 0.711
cog1
Component of oligomeric golgi complex 1.
     
 0.710
COG5
Component of oligomeric golgi complex 5.
     
 0.709
cog3
Component of oligomeric golgi complex 3.
   
 
 0.703
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.