STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osbpl9Oxysterol-binding protein; Belongs to the OSBP family. (739 aa)    
Predicted Functional Partners:
osbpl11
Oxysterol-binding protein; Belongs to the OSBP family.
    
  
0.759
OSBPL10
Oxysterol-binding protein; Belongs to the OSBP family.
    
  
0.759
Katnal2
Katanin p60 subunit A-like 2.
   
 
 0.631
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
   
 
 0.574
LOC103464667
VAMP (vesicle-associated membrane protein)-associated protein B and C.
   
 
 0.574
gfm2
Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
      
 0.549
sh3rf1
SH3 domain containing ring finger 1.
   
  
 0.543
LOC103468029
MSP domain-containing protein.
   
 
 0.511
qdpr
Quinoid dihydropteridine reductase a.
      
 0.475
wdr36
WD repeat domain 36.
      
 0.474
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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