STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspnSarcospan (Kras oncogene-associated gene). (224 aa)    
Predicted Functional Partners:
sgcg
Sarcoglycan, gamma.
   
 0.785
SGCZ
Sarcoglycan zeta.
   
 0.728
ENSPREP00000014893
Sarcoglycan, alpha.
   
 
 0.721
sgcb
Sarcoglycan, beta (dystrophin-associated glycoprotein).
     
 0.699
ENSPREP00000025758
Peptidase S72 domain-containing protein.
     
 0.684
dag1
Dystroglycan 1.
     
 0.684
sgcd
Sarcoglycan, delta (dystrophin-associated glycoprotein).
   
 0.678
sgce
Sarcoglycan, epsilon.
   
 
 0.653
bysl
Bystin-like.
      
 0.653
YES1
Tyrosine-protein kinase.
   
  
 0.648
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.