STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nucks1Nuclear casein kinase and cyclin-dependent kinase substrate 1a. (307 aa)    
Predicted Functional Partners:
hoxa13
Homeobox A13a.
   
  
 0.516
CDH7
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.509
TNFRSF11B
TNF receptor superfamily member 11b.
      
 0.503
hspg2
Heparan sulfate proteoglycan 2.
      
 0.503
RAB29
RAB29, member RAS oncogene family.
 
    
 0.498
Phc1
Uncharacterized protein.
  
     0.483
bnc2
Basonuclin 2.
      
 0.451
ENSPREP00000005251
POC5 centriolar protein homolog (Chlamydomonas).
      
 0.434
comp
Cartilage oligomeric matrix protein.
      
 0.414
pitx1
Homeobox protein.
   
  
 0.412
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.