STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhlhe41Basic helix-loop-helix family, member e41. (421 aa)    
Predicted Functional Partners:
LOC103469458
Nuclear receptor subfamily 1, group d, member 1.
   
  
 0.749
LOC103479643
Period circadian clock 2.
    
 0.730
per3
Period circadian clock 3.
    
 0.730
PER2
Period circadian regulator 2.
    
 0.730
LOC103480497
Period circadian clock 1b.
    
 0.730
dbp
D site albumin promoter binding protein b.
   
 0.671
LOC103472681
Circadian associated repressor of transcription a.
    
 
 0.602
cipc
CLOCK-interacting pacemaker a.
    
 
 0.599
LOC103464609
BZIP domain-containing protein.
    
 0.565
LOC103464602
Nuclear factor, interleukin 3 regulated, member 5.
    
 0.565
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.