STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ankrd27Uncharacterized protein. (77 aa)    
Predicted Functional Partners:
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.940
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.914
rab21
RAB21, member RAS oncogene family.
   
 0.819
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.777
LOC103469114
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.777
rab32
RAB32a, member RAS oncogene family.
    
 
 0.573
LOC103475390
RAB38c, member of RAS oncogene family.
    
 
 0.573
LOC103480388
Zgc:162171.
    
 
 0.573
LOC103475527
RAB38b, member of RAS oncogene family.
    
 
 0.573
RAB38
RAB38, member RAS oncogene family.
    
 
 0.573
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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