STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab5ifRAB5 interacting factor. (129 aa)    
Predicted Functional Partners:
tmco1
Transmembrane and coiled-coil domains 1.
   
 
 0.766
tbc1d31
TBC1 domain family, member 31.
      
 0.681
Sec61b
Uncharacterized protein.
   
   0.625
ncln
Nicalin.
   
   0.612
tmem147
Transmembrane protein 147.
   
   0.606
ccdc47
Coiled-coil domain containing 47.
    
   0.599
sec61g
SEC61 translocon gamma subunit.
   
   0.590
wdr83os
WD repeat domain 83 opposite strand.
   
   0.589
rpl10
Ribosomal protein L10.
   
   0.580
rpl27
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
   0.575
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.