STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000027108Syncoilin, intermediate filament protein. (349 aa)    
Predicted Functional Partners:
znf644
Zinc finger protein 644a.
  
 
  0.530
LOC103468924
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
    
 
 0.489
LOC103479597
Family with sequence similarity 131 member A.
  
    0.462
ENSPREP00000008080
Uncharacterized protein.
  
 
  0.431
LOC103466651
Synemin, intermediate filament protein; Belongs to the intermediate filament family.
   
 0.430
LOC103470687
Cytoskeleton associated protein 2-like.
  
     0.427
LOC103465648
Proline rich 33.
  
     0.417
aff3
AF4/FMR2 family, member 3.
  
  0.408
LOC103475867
Lysine (K)-specific demethylase 6B, b.
  
 
 0.401
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.