STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccser1Coiled-coil serine-rich protein 1. (976 aa)    
Predicted Functional Partners:
LOC103470491
Transient receptor potential cation channel, subfamily M, member 3.
      
 0.465
cemip2
Cell migration inducing hyaluronidase 2.
      
 0.465
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
      
 0.465
LOC103464721
Glutamate receptor, metabotropic 4.
      
 0.465
EFNA5
Ephrin A5; Belongs to the ephrin family.
      
 0.465
NELL1
Neural EGFL like 1.
      
 0.465
anks1b
Ankyrin repeat and sterile alpha motif domain containing 1B.
      
 0.465
LOC103478806
Cytochrome b5 reductase 4.
      
 0.418
ccdc6
Coiled-coil domain containing 6a.
      
 0.410
ret
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
      
 0.408
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.