STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim36Tripartite motif containing 36. (778 aa)    
Predicted Functional Partners:
clip1
CAP-GLY domain containing linker protein 1a.
   
 
 0.682
dctn1
Dynactin 1b.
    
 
 0.646
LOC103480555
Dynactin 1a.
    
 
 0.646
clasp2
Cytoplasmic linker associated protein 2.
    
 
 0.582
Clasp1
Uncharacterized protein.
    
 
 0.582
CLASP1
Uncharacterized protein.
    
 
 0.582
LOC103467628
Glycerol-3-phosphate dehydrogenase [NAD(+)].
   
  
 0.507
LOC103464302
Glutamate receptor interacting protein 2b.
      
 0.473
LOC103467517
Glutamate receptor interacting protein 2a.
      
 0.436
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.