STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vax1Ventral anterior homeobox 1. (285 aa)    
Predicted Functional Partners:
LOC103476847
Paired box 2a.
    
 
 0.672
pax6
Paired box 6b.
    
 
 0.623
LOC103476533
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
      
 0.476
shroom2
Uncharacterized protein.
    
 
 0.427
LOC103465371
LIM-domain binding 1b.
    
 0.409
LOC103471855
LIM domain binding 2a.
    
 0.409
ldb1
LIM domain binding 1a.
    
 0.409
rom1
Retinal outer segment membrane protein 1b.
      
 0.408
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 
 0.402
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.