sri protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sri

Uncharacterized protein. (187 aa)

Predicted Functional Partners:

cast

0.573

ENSPREP00000008391

0.472

sec31b

0.425

sec31a

0.425

ankrd40

0.425

LOC103474658

0.420

LOC103475916

0.420

ENSPREP00000003714

0.420

LOC103477211

0.420

LOC103477212

0.420

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000003714	cast	ENSPREP00000003714	ENSPREP00000030531	Uncharacterized protein.	Uncharacterized protein.	0.497
ENSPREP00000003714	sri	ENSPREP00000003714	ENSPREP00000027431	Uncharacterized protein.	Uncharacterized protein.	0.420
ENSPREP00000008391	LOC103477212	ENSPREP00000008391	ENSPREP00000005754	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.900
ENSPREP00000008391	cast	ENSPREP00000008391	ENSPREP00000030531	Uncharacterized protein.	Uncharacterized protein.	0.633
ENSPREP00000008391	sri	ENSPREP00000008391	ENSPREP00000027431	Uncharacterized protein.	Uncharacterized protein.	0.472
LOC103474658	cast	ENSPREP00000001359	ENSPREP00000030531	Calpain 12; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.580
LOC103474658	sri	ENSPREP00000001359	ENSPREP00000027431	Calpain 12; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.420
LOC103475916	cast	ENSPREP00000003675	ENSPREP00000030531	Zgc:55262; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.675
LOC103475916	sri	ENSPREP00000003675	ENSPREP00000027431	Zgc:55262; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.420
LOC103477211	cast	ENSPREP00000005727	ENSPREP00000030531	Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.673
LOC103477211	sri	ENSPREP00000005727	ENSPREP00000027431	Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.420
LOC103477212	ENSPREP00000008391	ENSPREP00000005754	ENSPREP00000008391	Uncharacterized protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.900
LOC103477212	cast	ENSPREP00000005754	ENSPREP00000030531	Uncharacterized protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.675
LOC103477212	sri	ENSPREP00000005754	ENSPREP00000027431	Uncharacterized protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.420
ankrd40	sri	ENSPREP00000030756	ENSPREP00000027431	Ankyrin repeat domain 40.	Uncharacterized protein.	0.425
cast	ENSPREP00000003714	ENSPREP00000030531	ENSPREP00000003714	Uncharacterized protein.	Uncharacterized protein.	0.497
cast	ENSPREP00000008391	ENSPREP00000030531	ENSPREP00000008391	Uncharacterized protein.	Uncharacterized protein.	0.633
cast	LOC103474658	ENSPREP00000030531	ENSPREP00000001359	Uncharacterized protein.	Calpain 12; Belongs to the peptidase C2 family.	0.580
cast	LOC103475916	ENSPREP00000030531	ENSPREP00000003675	Uncharacterized protein.	Zgc:55262; Belongs to the peptidase C2 family.	0.675
cast	LOC103477211	ENSPREP00000030531	ENSPREP00000005727	Uncharacterized protein.	Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family.	0.673