STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clg6h16orf70Si:dkey-102f14.5. (403 aa)    
Predicted Functional Partners:
bcas3
BCAS3 microtubule associated cell migration factor.
   
 
 0.876
Bcas3
Uncharacterized protein.
   
 
 0.772
prim1
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
 
      0.548
LOC103467726
RAD21 cohesin complex component like 1.
 
      0.510
mrpl48
Mitochondrial ribosomal protein L48.
      
 0.470
WHAMM
WASP homolog associated with actin, golgi membranes and microtubules.
    
 
 0.469
LOC103475843
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
      
 0.440
cask
Uncharacterized protein; Belongs to the MAGUK family.
      
 0.440
LOC103478347
RAD21 cohesin complex component a.
 
      0.425
ENSPREP00000020403
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.414
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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