STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM6PR/SET domain 6. (618 aa)    
Predicted Functional Partners:
cbfa2t2
CBFA2/RUNX1 partner transcriptional co-repressor 2.
    
   0.693
LOC103476942
PR domain containing 8.
      
 0.655
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
     
  0.650
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
     
  0.650
prdm8
PR domain containing 8b.
      
 0.637
prdm14
PR domain containing 14.
    
 
0.626
PIGY
Phosphatidylinositol glycan anchor biosynthesis class Y.
      
 0.430
smyd2
Uncharacterized protein.
    
 0.412
sh3rf3
SH3 domain containing ring finger 3.
    
 0.404
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.