STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468496Activating transcription factor 4b. (430 aa)    
Predicted Functional Partners:
ddit3
DNA-damage-inducible transcript 3.
   
 0.977
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
     
 0.953
eif2ak3
Eukaryotic translation initiation factor 2-alpha kinase 3.
     
 0.950
LOC103467753
CCAAT enhancer binding protein beta.
   
 0.922
ENSPREP00000012259
CCAAT enhancer binding protein gamma.
   
 0.918
LOC103477731
Activating transcription factor 4a.
  
  
 
0.906
rps6ka3
Non-specific serine/threonine protein kinase.
     
 0.904
LOC103462855
Ribosomal protein S6 kinase.
     
 0.904
rps6ka1
Ribosomal protein S6 kinase.
     
 0.904
rps6ka6
Ribosomal protein S6 kinase.
     
 0.904
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.