STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp8Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1075 aa)    
Predicted Functional Partners:
rnf41
Ring finger protein 41.
    
 0.985
rps27a
Ribosomal protein S27a.
    
 0.955
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.939
ubb
Uncharacterized protein.
   
 0.914
LOC103473189
Uncharacterized protein.
   
 0.914
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
   
 0.908
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
    
 0.904
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 0.880
ENSPREP00000009964
Ubiquitin-like domain-containing protein.
   
 0.860
otub1
Ubiquitin thioesterase.
    
 0.795
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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