STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sap30bpSAP30 binding protein. (209 aa)    
Predicted Functional Partners:
PUF60
Poly-U binding splicing factor b.
   
   0.700
Arid4a
Tudor domain-containing protein.
   
 
  0.610
arid4b
Translocase of outer mitochondrial membrane 20.
   
 
  0.610
suds3
SDS3 homolog, SIN3A corepressor complex component.
   
 
 0.604
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  
 0.535
sap30l
Sap30-like.
     
 0.502
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
  
 0.495
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 
  0.494
sap130
Sin3A-associated protein a.
   
 
  0.494
ENSPREP00000023356
Retinoblastoma-like 1 (p107).
   
  
 0.477
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.