LOC103475145 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103475145

EMAP like 2. (623 aa)

Predicted Functional Partners:

ENSPREP00000024188

0.684

mad2l1

0.682

LOC103461037

0.679

ift140

0.654

Taf12

0.650

LOC103459886

0.647

taf10

0.645

cpsf1

0.643

tex10

0.632

mad1l1

0.630

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000024188	LOC103459886	ENSPREP00000024188	ENSPREP00000004559	Uncharacterized protein.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.647
ENSPREP00000024188	LOC103461037	ENSPREP00000024188	ENSPREP00000019992	Uncharacterized protein.	RAN binding protein 2.	0.679
ENSPREP00000024188	LOC103475145	ENSPREP00000024188	ENSPREP00000027941	Uncharacterized protein.	EMAP like 2.	0.684
ENSPREP00000024188	Taf12	ENSPREP00000024188	ENSPREP00000007202	Uncharacterized protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.650
ENSPREP00000024188	cpsf1	ENSPREP00000024188	ENSPREP00000024232	Uncharacterized protein.	Cleavage and polyadenylation specific factor 1.	0.643
ENSPREP00000024188	ift140	ENSPREP00000024188	ENSPREP00000027530	Uncharacterized protein.	Intraflagellar transport 140 homolog (Chlamydomonas).	0.654
ENSPREP00000024188	mad1l1	ENSPREP00000024188	ENSPREP00000000149	Uncharacterized protein.	Mitotic arrest deficient 1 like 1.	0.630
ENSPREP00000024188	mad2l1	ENSPREP00000024188	ENSPREP00000031986	Uncharacterized protein.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.682
ENSPREP00000024188	taf10	ENSPREP00000024188	ENSPREP00000025580	Uncharacterized protein.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.645
ENSPREP00000024188	tex10	ENSPREP00000024188	ENSPREP00000027544	Uncharacterized protein.	Testis expressed 10.	0.632
LOC103459886	ENSPREP00000024188	ENSPREP00000004559	ENSPREP00000024188	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.647
LOC103459886	LOC103475145	ENSPREP00000004559	ENSPREP00000027941	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	EMAP like 2.	0.647
LOC103459886	Taf12	ENSPREP00000004559	ENSPREP00000007202	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC103459886	taf10	ENSPREP00000004559	ENSPREP00000025580	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC103461037	ENSPREP00000024188	ENSPREP00000019992	ENSPREP00000024188	RAN binding protein 2.	Uncharacterized protein.	0.679
LOC103461037	LOC103475145	ENSPREP00000019992	ENSPREP00000027941	RAN binding protein 2.	EMAP like 2.	0.679
LOC103461037	cpsf1	ENSPREP00000019992	ENSPREP00000024232	RAN binding protein 2.	Cleavage and polyadenylation specific factor 1.	0.667
LOC103461037	mad2l1	ENSPREP00000019992	ENSPREP00000031986	RAN binding protein 2.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.962
LOC103475145	ENSPREP00000024188	ENSPREP00000027941	ENSPREP00000024188	EMAP like 2.	Uncharacterized protein.	0.684
LOC103475145	LOC103459886	ENSPREP00000027941	ENSPREP00000004559	EMAP like 2.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.647