STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox7SRY-box transcription factor 7. (407 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.726
LOC103473609
POU domain protein.
    
 0.650
tcf7
Transcription factor 7.
    
0.588
lef1
Lymphoid enhancer-binding factor 1.
    
0.558
tgfbrap1
Transforming growth factor, beta receptor associated protein 1.
      
 0.512
Ptafr
Platelet-activating factor receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.506
MAFB
MAF bZIP transcription factor B.
    
 
 0.504
LOC103465321
Junction plakoglobin a.
    
 0.497
LOC103472282
Uncharacterized protein.
    
 0.497
LOC103476642
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.459
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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