STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpn13Protein tyrosine phosphatase non-receptor type 13. (2569 aa)    
Predicted Functional Partners:
NUP54
Nucleoporin 54.
   
  
 0.681
plekha2
Uncharacterized protein.
    
 0.628
rapgef6
Rap guanine nucleotide exchange factor (GEF) 6.
    
 0.610
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 
 0.608
ENSPREP00000020797
TNFR-Cys domain-containing protein.
   
 
 0.522
apc2
APC regulator of WNT signaling pathway 2.
   
 
 0.510
apc
APC regulator of WNT signaling pathway.
   
 
 0.510
LOC103476702
Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a.
    
  0.469
gab1
GRB2-associated binding protein 1.
    
 0.466
LOC103480707
PH domain-containing protein.
    
 0.466
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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