STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppargc1aPeroxisome proliferator-activated receptor gamma, coactivator 1 alpha. (1284 aa)    
Predicted Functional Partners:
esrra
Estrogen-related receptor alpha.
   
 0.984
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.936
bud31
BUD31 homolog.
   
 0.934
xab2
XPA binding protein 2.
   
 0.931
snw1
SNW domain containing 1.
   
 0.931
LOC103460347
ISY1 splicing factor homolog.
   
 0.922
LOC103471211
Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).
   
 0.905
ENSPREP00000011180
Nuclear receptor subfamily 5, group A, member 2.
    
 
 0.891
cwc15
CWC15 spliceosome associated protein homolog.
   
 
 0.887
aqr
Aquarius intron-binding spliceosomal factor.
    
 0.885
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.