STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl38Mitochondrial ribosomal protein L38. (385 aa)    
Predicted Functional Partners:
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.933
mrpl16
Mitochondrial ribosomal protein L16.
   
 0.933
dap3
Death associated protein 3.
   
 
 0.930
mrpl10
Mitochondrial ribosomal protein L10.
   
 
 0.927
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.925
ENSPREP00000006860
Mitochondrial ribosomal protein S10.
   
 
 0.923
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.922
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.921
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.919
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.915
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.