STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf6Ring finger protein (C3H2C3 type) 6. (589 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.802
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.765
LOC103462100
Mothers against decapentaplegic homolog.
   
 0.674
smad6
Mothers against decapentaplegic homolog.
   
 0.674
smad7
Mothers against decapentaplegic homolog.
   
 0.674
LOC103472553
SH3 and PX domains 2Aa.
   
  
 0.648
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.646
LOC103464734
Rap-GAP domain-containing protein.
      
 0.646
LOC103468085
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
      
 0.646
clvs2
Clavesin 2.
      
 0.646
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.