STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp46Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family. (372 aa)    
Predicted Functional Partners:
Wdr48
WD_REPEATS_REGION domain-containing protein.
   
 0.856
wdr48
WD repeat domain 48b.
   
 0.856
wdr20
WD repeat domain 20a.
   
 0.832
LOC103475215
DM1 locus, WD repeat containing.
   
 0.832
LOC103457914
WD repeat domain 20b.
   
 0.804
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.723
rps27a
Ribosomal protein S27a.
    
 0.697
exoc7
Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
      
 0.646
fancd2
FA complementation group D2.
    
 0.623
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.595
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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