STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbbp6Uncharacterized protein. (212 aa)    
Predicted Functional Partners:
LOC103462989-2
DWNN domain-containing protein.
 
      0.900
ube3d
Ubiquitin protein ligase E3D.
    
 0.876
WDR33
WD repeat domain 33.
   
 
 0.856
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 
 0.850
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.849
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 
 0.849
sympk
Symplekin.
    
 
 0.841
ENSPREP00000018529
FIP1 like 1b (S. cerevisiae).
    
 
 0.838
papolg
Poly(A) polymerase gamma.
    
 
 0.836
Pcf11
CID domain-containing protein.
   
 
 0.762
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.