STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474478Leucine rich repeat containing 51. (194 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.946
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.935
Snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.929
sf3a3
Splicing factor 3a, subunit 3.
   
 0.924
snrpg
Small nuclear ribonucleoprotein G.
   
 0.923
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.922
sf3a1
Splicing factor 3a, subunit 1.
   
 0.914
sf3b1
Splicing factor 3b, subunit 1.
   
 0.912
phf5a
PHD finger protein 5A.
   
 0.912
sf3b3
Splicing factor 3b, subunit 3.
    
 0.908
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.