STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
larp7La ribonucleoprotein domain family, member 7. (560 aa)    
Predicted Functional Partners:
Cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
   
 0.954
ENSPREP00000017857
Bin3-type SAM domain-containing protein.
    
 
 0.937
LOC103475836
Methylphosphate capping enzyme.
    
 
 0.937
LOC103469343
HEXIM P-TEFb complex subunit 1.
    
 
 0.846
Nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.719
ENSPREP00000012074
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
 0.717
ccnt2
Cyclin T2; Belongs to the cyclin family.
   
 0.717
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 0.698
nop10
NOP10 ribonucleoprotein homolog (yeast).
   
  
 0.684
Ddx18
DEAD (Asp-Glu-Ala-Asp) box polypeptide 18; Belongs to the DEAD box helicase family.
   
 0.683
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.