STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsm11LSM11, U7 small nuclear RNA associated. (339 aa)    
Predicted Functional Partners:
lsm10
LSM10, U7 small nuclear RNA associated.
     
 0.968
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.964
snrpd3
Small nuclear ribonucleoprotein Sm D3.
    
 0.960
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
 0.960
snrpg
Small nuclear ribonucleoprotein G.
    
 0.956
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
     
 0.837
ENSPREP00000001871
SLBP_RNA_bind domain-containing protein.
     
 0.781
slbp
Stem-loop binding protein.
     
 0.781
ENSPREP00000022980
Small nuclear ribonucleoprotein-associated protein.
    
 0.746
Naa38
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
    
 0.745
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.