STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clint1Clathrin interactor 1a. (617 aa)    
Predicted Functional Partners:
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
    
 
 0.920
gak
Cyclin G associated kinase.
    
 0.919
eps15
Epidermal growth factor receptor pathway substrate 15.
    
 0.846
LOC103464192
Uncharacterized protein.
    
 0.837
LOC103479233
Uncharacterized protein.
    
 0.820
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
    
 
 0.677
LOC103466654
Tyrosine-protein kinase receptor.
    
  0.658
LOC103462605
Tyrosine-protein kinase receptor.
    
  0.658
LOC103458160
Fibroblast growth factor receptor.
     
  0.650
LOC103477293
Fibroblast growth factor receptor.
     
  0.650
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.