LOC103457758 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103457758

Uncharacterized protein. (635 aa)

Predicted Functional Partners:

f2

0.984

LOC103460587

0.827

LOC103461875

0.629

LOC103473499

0.607

tfpi2

0.576

dgke

0.570

serpinc1

0.565

COLEC10

0.565

sele

0.565

LOC103480133

0.541

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COLEC10	LOC103457758	ENSPREP00000015637	ENSPREP00000029150	Collectin subfamily member 10.	Uncharacterized protein.	0.565
COLEC10	sele	ENSPREP00000015637	ENSPREP00000016357	Collectin subfamily member 10.	Selectin E.	0.646
LOC103457758	COLEC10	ENSPREP00000029150	ENSPREP00000015637	Uncharacterized protein.	Collectin subfamily member 10.	0.565
LOC103457758	LOC103460587	ENSPREP00000029150	ENSPREP00000005276	Uncharacterized protein.	Uncharacterized protein.	0.827
LOC103457758	LOC103461875	ENSPREP00000029150	ENSPREP00000030497	Uncharacterized protein.	Tissue factor pathway inhibitor.	0.629
LOC103457758	LOC103473499	ENSPREP00000029150	ENSPREP00000027608	Uncharacterized protein.	Coagulation factor II thrombin receptor; Belongs to the G-protein coupled receptor 1 family.	0.607
LOC103457758	LOC103480133	ENSPREP00000029150	ENSPREP00000004625	Uncharacterized protein.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	0.541
LOC103457758	dgke	ENSPREP00000029150	ENSPREP00000003786	Uncharacterized protein.	Diacylglycerol kinase.	0.570
LOC103457758	f2	ENSPREP00000029150	ENSPREP00000016717	Uncharacterized protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.984
LOC103457758	sele	ENSPREP00000029150	ENSPREP00000016357	Uncharacterized protein.	Selectin E.	0.565
LOC103457758	serpinc1	ENSPREP00000029150	ENSPREP00000001582	Uncharacterized protein.	Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.	0.565
LOC103457758	tfpi2	ENSPREP00000029150	ENSPREP00000003766	Uncharacterized protein.	Tissue factor pathway inhibitor.	0.576
LOC103460587	LOC103457758	ENSPREP00000005276	ENSPREP00000029150	Uncharacterized protein.	Uncharacterized protein.	0.827
LOC103460587	LOC103461875	ENSPREP00000005276	ENSPREP00000030497	Uncharacterized protein.	Tissue factor pathway inhibitor.	0.584
LOC103460587	LOC103473499	ENSPREP00000005276	ENSPREP00000027608	Uncharacterized protein.	Coagulation factor II thrombin receptor; Belongs to the G-protein coupled receptor 1 family.	0.658
LOC103460587	LOC103480133	ENSPREP00000005276	ENSPREP00000004625	Uncharacterized protein.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	0.453
LOC103460587	f2	ENSPREP00000005276	ENSPREP00000016717	Uncharacterized protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.984
LOC103460587	serpinc1	ENSPREP00000005276	ENSPREP00000001582	Uncharacterized protein.	Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.	0.877
LOC103460587	tfpi2	ENSPREP00000005276	ENSPREP00000003766	Uncharacterized protein.	Tissue factor pathway inhibitor.	0.428
LOC103461875	LOC103457758	ENSPREP00000030497	ENSPREP00000029150	Tissue factor pathway inhibitor.	Uncharacterized protein.	0.629