ENSPREP00000029176 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000029176

Uncharacterized protein. (168 aa)

Predicted Functional Partners:

ENSPREP00000006501

0.929

LOC103458108

0.696

slc3a2

0.696

LOC103474630

0.696

slc3a1

0.598

alkbh3

0.514

kiaa0513

0.514

alkbh2

0.514

ENSPREP00000006896

0.505

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000006501	ENSPREP00000006896	ENSPREP00000006501	ENSPREP00000006896	Uncharacterized protein.	2-epi-5-epi-valiolone synthase.	0.505
ENSPREP00000006501	ENSPREP00000029176	ENSPREP00000006501	ENSPREP00000029176	Uncharacterized protein.	Uncharacterized protein.	0.929
ENSPREP00000006501	LOC103458108	ENSPREP00000006501	ENSPREP00000005043	Uncharacterized protein.	Solute carrier family 3 member 2b.	0.814
ENSPREP00000006501	LOC103474630	ENSPREP00000006501	ENSPREP00000033832	Uncharacterized protein.	Si:dkey-202g17.3.	0.814
ENSPREP00000006501	alkbh2	ENSPREP00000006501	ENSPREP00000032723	Uncharacterized protein.	AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.	0.514
ENSPREP00000006501	alkbh3	ENSPREP00000006501	ENSPREP00000008043	Uncharacterized protein.	AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.	0.514
ENSPREP00000006501	kiaa0513	ENSPREP00000006501	ENSPREP00000028872	Uncharacterized protein.	Zgc:91860.	0.514
ENSPREP00000006501	slc3a1	ENSPREP00000006501	ENSPREP00000005146	Uncharacterized protein.	Solute carrier family 3 member 1.	0.596
ENSPREP00000006501	slc3a2	ENSPREP00000006501	ENSPREP00000029732	Uncharacterized protein.	Aamy domain-containing protein.	0.814
ENSPREP00000006896	ENSPREP00000006501	ENSPREP00000006896	ENSPREP00000006501	2-epi-5-epi-valiolone synthase.	Uncharacterized protein.	0.505
ENSPREP00000006896	ENSPREP00000029176	ENSPREP00000006896	ENSPREP00000029176	2-epi-5-epi-valiolone synthase.	Uncharacterized protein.	0.505
ENSPREP00000029176	ENSPREP00000006501	ENSPREP00000029176	ENSPREP00000006501	Uncharacterized protein.	Uncharacterized protein.	0.929
ENSPREP00000029176	ENSPREP00000006896	ENSPREP00000029176	ENSPREP00000006896	Uncharacterized protein.	2-epi-5-epi-valiolone synthase.	0.505
ENSPREP00000029176	LOC103458108	ENSPREP00000029176	ENSPREP00000005043	Uncharacterized protein.	Solute carrier family 3 member 2b.	0.696
ENSPREP00000029176	LOC103474630	ENSPREP00000029176	ENSPREP00000033832	Uncharacterized protein.	Si:dkey-202g17.3.	0.696
ENSPREP00000029176	alkbh2	ENSPREP00000029176	ENSPREP00000032723	Uncharacterized protein.	AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.	0.514
ENSPREP00000029176	alkbh3	ENSPREP00000029176	ENSPREP00000008043	Uncharacterized protein.	AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.	0.514
ENSPREP00000029176	kiaa0513	ENSPREP00000029176	ENSPREP00000028872	Uncharacterized protein.	Zgc:91860.	0.514
ENSPREP00000029176	slc3a1	ENSPREP00000029176	ENSPREP00000005146	Uncharacterized protein.	Solute carrier family 3 member 1.	0.598
ENSPREP00000029176	slc3a2	ENSPREP00000029176	ENSPREP00000029732	Uncharacterized protein.	Aamy domain-containing protein.	0.696