ncmap protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ncmap

Uncharacterized protein. (129 aa)

Predicted Functional Partners:

LOC103461037

0.952

UPF2

0.911

TCERG1

0.885

LOC103457395

0.866

LOC103458235

0.866

prpf38a

0.852

wbp11

0.848

sf3b1

0.847

NCBP1

0.841

pnn

0.840

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103457395	LOC103458235	ENSPREP00000012597	ENSPREP00000013618	RNA binding motif protein 25b.	RNA binding motif protein 25a.	0.901
LOC103457395	NCBP1	ENSPREP00000012597	ENSPREP00000008871	RNA binding motif protein 25b.	Nuclear cap binding protein subunit 1.	0.929
LOC103457395	TCERG1	ENSPREP00000012597	ENSPREP00000011692	RNA binding motif protein 25b.	Transcription elongation regulator 1.	0.815
LOC103457395	ncmap	ENSPREP00000012597	ENSPREP00000029254	RNA binding motif protein 25b.	Uncharacterized protein.	0.866
LOC103457395	pnn	ENSPREP00000012597	ENSPREP00000011254	RNA binding motif protein 25b.	Pinin, desmosome associated protein.	0.619
LOC103457395	prpf38a	ENSPREP00000012597	ENSPREP00000003987	RNA binding motif protein 25b.	Pre-mRNA processing factor 38A.	0.423
LOC103457395	sf3b1	ENSPREP00000012597	ENSPREP00000029090	RNA binding motif protein 25b.	Splicing factor 3b, subunit 1.	0.862
LOC103458235	LOC103457395	ENSPREP00000013618	ENSPREP00000012597	RNA binding motif protein 25a.	RNA binding motif protein 25b.	0.901
LOC103458235	NCBP1	ENSPREP00000013618	ENSPREP00000008871	RNA binding motif protein 25a.	Nuclear cap binding protein subunit 1.	0.929
LOC103458235	TCERG1	ENSPREP00000013618	ENSPREP00000011692	RNA binding motif protein 25a.	Transcription elongation regulator 1.	0.815
LOC103458235	ncmap	ENSPREP00000013618	ENSPREP00000029254	RNA binding motif protein 25a.	Uncharacterized protein.	0.866
LOC103458235	pnn	ENSPREP00000013618	ENSPREP00000011254	RNA binding motif protein 25a.	Pinin, desmosome associated protein.	0.619
LOC103458235	prpf38a	ENSPREP00000013618	ENSPREP00000003987	RNA binding motif protein 25a.	Pre-mRNA processing factor 38A.	0.423
LOC103458235	sf3b1	ENSPREP00000013618	ENSPREP00000029090	RNA binding motif protein 25a.	Splicing factor 3b, subunit 1.	0.862
LOC103461037	NCBP1	ENSPREP00000019992	ENSPREP00000008871	RAN binding protein 2.	Nuclear cap binding protein subunit 1.	0.955
LOC103461037	ncmap	ENSPREP00000019992	ENSPREP00000029254	RAN binding protein 2.	Uncharacterized protein.	0.952
LOC103461037	sf3b1	ENSPREP00000019992	ENSPREP00000029090	RAN binding protein 2.	Splicing factor 3b, subunit 1.	0.500
NCBP1	LOC103457395	ENSPREP00000008871	ENSPREP00000012597	Nuclear cap binding protein subunit 1.	RNA binding motif protein 25b.	0.929
NCBP1	LOC103458235	ENSPREP00000008871	ENSPREP00000013618	Nuclear cap binding protein subunit 1.	RNA binding motif protein 25a.	0.929
NCBP1	LOC103461037	ENSPREP00000008871	ENSPREP00000019992	Nuclear cap binding protein subunit 1.	RAN binding protein 2.	0.955