STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466153Si:dkeyp-19e1.3. (844 aa)    
Predicted Functional Partners:
LOC103474679
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.659
RABGEF1
RAB guanine nucleotide exchange factor 1.
   
 0.659
LOC103470250
Uncharacterized protein.
   
  0.655
LOC103459440
Uncharacterized protein.
    
 0.588
RAB19
RAB19, member RAS oncogene family.
    
 0.588
LOC103477863
RAB5A, member RAS oncogene family, b.
    
 0.489
ENSPREP00000009603
RAB5A, member RAS oncogene family, a.
    
 0.489
rab5c
RAB5C, member RAS oncogene family.
    
 0.489
LOC103481860
RAB5B, member RAS oncogene family.
    
 0.489
LOC103481258
Uncharacterized protein.
    
 0.489
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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