STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466156Carnitine palmitoyltransferase 1Ab (liver); Belongs to the carnitine/choline acetyltransferase family. (772 aa)    
Predicted Functional Partners:
cpt2
Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.
  
 
0.925
acacb
Acetyl-CoA carboxylase beta.
     
 0.918
acsl3
Uncharacterized protein.
   
 
 0.721
LOC103470507
Acyl-CoA synthetase long chain family member 2.
   
 
 0.720
LOC103479395
Acyl-CoA synthetase long chain family member 3b.
   
 
 0.704
LOC103470977
Acyl-CoA synthetase long chain family member 4a.
   
 
 0.704
chkb
Choline kinase beta.
 
 
  
 0.702
ENSPREP00000016743
Uncharacterized protein.
   
 
 0.697
ACSL1
Acyl-CoA synthetase long chain family member 1.
   
 
 0.687
LOC103475331
AMP-binding domain-containing protein.
   
 
 0.687
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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