ebp protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ebp

EBP cholestenol delta-isomerase. (249 aa)

Predicted Functional Partners:

sc5d

0.970

dhcr24

0.961

LOC103463731

0.948

tm7sf2

0.939

LOC103462946

0.848

atp6v1f

0.778

atp6v0b

0.745

nsdhl

0.711

dhcr7

0.697

lss

0.592

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103462946	atp6v0b	ENSPREP00000027176	ENSPREP00000024799	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	0.999
LOC103462946	atp6v1f	ENSPREP00000027176	ENSPREP00000009868	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.999
LOC103462946	ebp	ENSPREP00000027176	ENSPREP00000029637	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	EBP cholestenol delta-isomerase.	0.848
LOC103463731	dhcr24	ENSPREP00000008331	ENSPREP00000030936	Hydroxysteroid (17-beta) dehydrogenase 7.	24-dehydrocholesterol reductase.	0.945
LOC103463731	dhcr7	ENSPREP00000008331	ENSPREP00000004485	Hydroxysteroid (17-beta) dehydrogenase 7.	7-dehydrocholesterol reductase.	0.743
LOC103463731	ebp	ENSPREP00000008331	ENSPREP00000029637	Hydroxysteroid (17-beta) dehydrogenase 7.	EBP cholestenol delta-isomerase.	0.948
LOC103463731	lss	ENSPREP00000008331	ENSPREP00000001213	Hydroxysteroid (17-beta) dehydrogenase 7.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.965
LOC103463731	nsdhl	ENSPREP00000008331	ENSPREP00000010280	Hydroxysteroid (17-beta) dehydrogenase 7.	NAD(P) dependent steroid dehydrogenase-like; Belongs to the 3-beta-HSD family.	0.983
LOC103463731	sc5d	ENSPREP00000008331	ENSPREP00000023480	Hydroxysteroid (17-beta) dehydrogenase 7.	Sterol-C5-desaturase; Belongs to the sterol desaturase family.	0.966
LOC103463731	tm7sf2	ENSPREP00000008331	ENSPREP00000007990	Hydroxysteroid (17-beta) dehydrogenase 7.	Transmembrane 7 superfamily member 2.	0.743
atp6v0b	LOC103462946	ENSPREP00000024799	ENSPREP00000027176	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.999
atp6v0b	atp6v1f	ENSPREP00000024799	ENSPREP00000009868	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.999
atp6v0b	ebp	ENSPREP00000024799	ENSPREP00000029637	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	EBP cholestenol delta-isomerase.	0.745
atp6v1f	LOC103462946	ENSPREP00000009868	ENSPREP00000027176	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.	0.999
atp6v1f	atp6v0b	ENSPREP00000009868	ENSPREP00000024799	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	0.999
atp6v1f	ebp	ENSPREP00000009868	ENSPREP00000029637	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	EBP cholestenol delta-isomerase.	0.778
dhcr24	LOC103463731	ENSPREP00000030936	ENSPREP00000008331	24-dehydrocholesterol reductase.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.945
dhcr24	dhcr7	ENSPREP00000030936	ENSPREP00000004485	24-dehydrocholesterol reductase.	7-dehydrocholesterol reductase.	0.978
dhcr24	ebp	ENSPREP00000030936	ENSPREP00000029637	24-dehydrocholesterol reductase.	EBP cholestenol delta-isomerase.	0.961
dhcr24	lss	ENSPREP00000030936	ENSPREP00000001213	24-dehydrocholesterol reductase.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.974