STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466165Oxysterol-binding protein; Belongs to the OSBP family. (861 aa)    
Predicted Functional Partners:
LOC103459619
G protein-coupled receptor 89B.
 
      0.814
Katnal2
Katanin p60 subunit A-like 2.
   
 
 0.631
LOC103466161
Nucleosome assembly protein 1-like 4a; Belongs to the nucleosome assembly protein (NAP) family.
 
    
 0.509
slc22a18
Solute carrier family 22 member 18.
   
  
 0.508
utp20
UTP20 small subunit processome component.
   
  
 0.475
Gm2a
GM2 ganglioside activator.
      
 0.473
arl15
ADP-ribosylation factor-like 15a.
   
 0.450
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
      
 0.448
Phlda2
Pleckstrin homology-like domain, family A, member 2.
      
 0.440
LOC103480422
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
    
 0.421
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.