STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000029814Membrane-associated ring finger (C3HC4) 9. (328 aa)    
Predicted Functional Partners:
tank
TRAF family member-associated NFKB activator.
   
  
 0.539
LOC103481737
Syntaxin 4; Belongs to the syntaxin family.
      
 0.476
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.452
LOC103466190
CCR4-NOT transcription complex, subunit 2.
    
 
 0.452
faf1
Fas (TNFRSF6) associated factor 1.
   
 
 0.446
faf2
Fas associated factor family member 2.
   
 
 0.446
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast).
    
 
 0.445
ube2b
Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.
   
 0.440
znf593
Zinc finger protein 593.
      
 0.424
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
    
 
 0.409
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.