STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB27BRAB27B, member RAS oncogene family. (218 aa)    
Predicted Functional Partners:
sytl1
Synaptotagmin-like 1.
   
 
 0.747
LOC103474215
Synaptotagmin-like 2b.
   
 
 0.747
Sytl3
RabBD domain-containing protein.
   
 
 0.691
sytl5
Synaptotagmin-like 5.
   
 
 0.691
LOC103459897
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.690
LOC103481063
Melanophilin a.
    
 
 0.680
igf2bp2
Insulin-like growth factor 2 mRNA binding protein 2a.
      
 0.630
madd
MAP-kinase activating death domain.
     
 0.619
HSP90AA1
Heat shock protein 90 alpha family class A member 1.
      
 0.571
vps36
Vacuolar protein sorting 36 homolog.
 
    
 0.571
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (26%) [HD]