pex11b protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pex11b

Peroxisomal biogenesis factor 11 beta. (261 aa)

Predicted Functional Partners:

pex19

0.969

pex11g

0.944

pex11a

0.903

pex14

0.899

pex12

0.865

pex3

0.849

pex16

0.794

fam185a

0.782

abcd3

0.740

pxmp2

0.697

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abcd3	fam185a	ENSPREP00000008027	ENSPREP00000024036	ATP-binding cassette, sub-family D (ALD), member 3a.	Family with sequence similarity 185 member A.	0.636
abcd3	pex11a	ENSPREP00000008027	ENSPREP00000009677	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 11 alpha.	0.740
abcd3	pex11b	ENSPREP00000008027	ENSPREP00000029865	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 11 beta.	0.740
abcd3	pex11g	ENSPREP00000008027	ENSPREP00000016101	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 11 gamma.	0.574
abcd3	pex12	ENSPREP00000008027	ENSPREP00000009322	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.819
abcd3	pex14	ENSPREP00000008027	ENSPREP00000023963	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 14.	0.779
abcd3	pex16	ENSPREP00000008027	ENSPREP00000012233	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal membrane protein PEX16.	0.835
abcd3	pex19	ENSPREP00000008027	ENSPREP00000001567	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 19.	0.926
abcd3	pex3	ENSPREP00000008027	ENSPREP00000020654	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal biogenesis factor 3.	0.881
abcd3	pxmp2	ENSPREP00000008027	ENSPREP00000032787	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.709
fam185a	abcd3	ENSPREP00000024036	ENSPREP00000008027	Family with sequence similarity 185 member A.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.636
fam185a	pex11a	ENSPREP00000024036	ENSPREP00000009677	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 11 alpha.	0.782
fam185a	pex11b	ENSPREP00000024036	ENSPREP00000029865	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 11 beta.	0.782
fam185a	pex11g	ENSPREP00000024036	ENSPREP00000016101	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 11 gamma.	0.782
fam185a	pex12	ENSPREP00000024036	ENSPREP00000009322	Family with sequence similarity 185 member A.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.906
fam185a	pex16	ENSPREP00000024036	ENSPREP00000012233	Family with sequence similarity 185 member A.	Peroxisomal membrane protein PEX16.	0.790
fam185a	pex19	ENSPREP00000024036	ENSPREP00000001567	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 19.	0.976
fam185a	pex3	ENSPREP00000024036	ENSPREP00000020654	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 3.	0.852
pex11a	abcd3	ENSPREP00000009677	ENSPREP00000008027	Peroxisomal biogenesis factor 11 alpha.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.740
pex11a	fam185a	ENSPREP00000009677	ENSPREP00000024036	Peroxisomal biogenesis factor 11 alpha.	Family with sequence similarity 185 member A.	0.782