STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssna1Sjogren syndrome nuclear autoantigen 1. (112 aa)    
Predicted Functional Partners:
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
   
    0.559
Haus1
HAUS augmin-like complex, subunit 1.
     
 0.530
nup43
Nucleoporin 43.
      
 0.527
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
   
   0.511
cfap99
Cilia and flagella associated protein 99.
      
 0.472
haus7
HAUS augmin-like complex, subunit 7.
     
 0.457
psmd10
Proteasome 26S subunit, non-ATPase 10.
     
 0.444
rsph10b
Radial spoke head 10 homolog B.
      
 0.440
cfap70
Uncharacterized protein.
     
 0.431
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.