LOC103467373 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103467373

Nuclear receptor subfamily 1, group D, member 4a. (585 aa)

Predicted Functional Partners:

ncor2

0.838

ncor1

0.838

TADA1

0.801

LOC103482295

0.717

gps2

0.717

LOC103478869

0.717

ENSPREP00000004470

0.615

LOC103477707

0.419

LOC103471958

0.418

thoc2

0.412

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004470	LOC103467373	ENSPREP00000004470	ENSPREP00000030170	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 4a.	0.615
ENSPREP00000004470	LOC103471958	ENSPREP00000004470	ENSPREP00000020256	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 2b.	0.460
ENSPREP00000004470	LOC103477707	ENSPREP00000004470	ENSPREP00000002575	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 2a.	0.460
ENSPREP00000004470	LOC103478869	ENSPREP00000004470	ENSPREP00000032177	Uncharacterized protein.	Selenoprotein J.	0.639
ENSPREP00000004470	LOC103482295	ENSPREP00000004470	ENSPREP00000015538	Uncharacterized protein.	Uncharacterized protein.	0.639
ENSPREP00000004470	TADA1	ENSPREP00000004470	ENSPREP00000005904	Uncharacterized protein.	Transcriptional adaptor 1.	0.728
ENSPREP00000004470	gps2	ENSPREP00000004470	ENSPREP00000019773	Uncharacterized protein.	G protein pathway suppressor 2.	0.939
ENSPREP00000004470	ncor1	ENSPREP00000004470	ENSPREP00000009626	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.954
ENSPREP00000004470	ncor2	ENSPREP00000004470	ENSPREP00000001887	Uncharacterized protein.	Nuclear receptor corepressor 2.	0.954
LOC103467373	ENSPREP00000004470	ENSPREP00000030170	ENSPREP00000004470	Nuclear receptor subfamily 1, group D, member 4a.	Uncharacterized protein.	0.615
LOC103467373	LOC103471958	ENSPREP00000030170	ENSPREP00000020256	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor subfamily 1, group D, member 2b.	0.418
LOC103467373	LOC103477707	ENSPREP00000030170	ENSPREP00000002575	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor subfamily 1, group D, member 2a.	0.419
LOC103467373	LOC103478869	ENSPREP00000030170	ENSPREP00000032177	Nuclear receptor subfamily 1, group D, member 4a.	Selenoprotein J.	0.717
LOC103467373	LOC103482295	ENSPREP00000030170	ENSPREP00000015538	Nuclear receptor subfamily 1, group D, member 4a.	Uncharacterized protein.	0.717
LOC103467373	TADA1	ENSPREP00000030170	ENSPREP00000005904	Nuclear receptor subfamily 1, group D, member 4a.	Transcriptional adaptor 1.	0.801
LOC103467373	gps2	ENSPREP00000030170	ENSPREP00000019773	Nuclear receptor subfamily 1, group D, member 4a.	G protein pathway suppressor 2.	0.717
LOC103467373	ncor1	ENSPREP00000030170	ENSPREP00000009626	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor corepressor 1.	0.838
LOC103467373	ncor2	ENSPREP00000030170	ENSPREP00000001887	Nuclear receptor subfamily 1, group D, member 4a.	Nuclear receptor corepressor 2.	0.838
LOC103467373	thoc2	ENSPREP00000030170	ENSPREP00000032098	Nuclear receptor subfamily 1, group D, member 4a.	THO complex 2.	0.412
LOC103471958	ENSPREP00000004470	ENSPREP00000020256	ENSPREP00000004470	Nuclear receptor subfamily 1, group D, member 2b.	Uncharacterized protein.	0.460