STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raraRetinoic acid receptor, alpha a. (452 aa)    
Predicted Functional Partners:
Rxra
Retinoid X receptor, alpha a.
   
0.702
ncor2
Nuclear receptor corepressor 2.
    
 0.639
ncor1
Nuclear receptor corepressor 1.
    
 0.639
brca1
Uncharacterized protein.
    
 
 0.628
LOC103463575
Uncharacterized protein.
   
0.612
LOC103478548
Retinoid x receptor, beta b.
   
0.609
RXRB
Retinoid X receptor beta.
   
0.609
hoxc11
Homeobox C11a.
    
 
 0.602
TADA1
Transcriptional adaptor 1.
    
 0.596
LOC103477707
Nuclear receptor subfamily 1, group D, member 2a.
   
0.567
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.