STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cachd1Cache domain containing 1. (1303 aa)    
Predicted Functional Partners:
tmem259
Transmembrane protein 259.
      
 0.630
smpdl3b
Acid sphingomyelinase-like phosphodiesterase.
      
 0.582
stt3a
STT3 oligosaccharyltransferase complex catalytic subunit A.
    
 
 0.550
ggcx
Gamma-glutamyl carboxylase.
      
 0.549
emc1
ER membrane protein complex subunit 1.
      
 0.549
cacnb4
Calcium channel, voltage-dependent, beta 4a subunit.
   
 0.493
LOC103467623
Calcium channel, voltage-dependent, beta 3a.
   
 0.493
cacnb2
Calcium channel, voltage-dependent, beta 2a.
   
 0.493
cacnb1
Calcium channel, voltage-dependent, beta 1 subunit.
   
 0.493
LOC103475101
Calcium channel, voltage-dependent, beta 4b subunit.
   
 0.493
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.