gdap1l1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gdap1l1

Ganglioside induced differentiation associated protein 1-like 1. (366 aa)

Predicted Functional Partners:

pex16

0.706

pex19

0.700

pex3

0.631

pex12

0.623

atad1

0.595

LOC103469725

0.595

pex14

0.550

abcd3

0.547

abcd4

0.547

abcd2

0.537

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103469725	abcd2	ENSPREP00000029059	ENSPREP00000011112	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	ATP-binding cassette, sub-family D (ALD), member 2.	0.617
LOC103469725	abcd3	ENSPREP00000029059	ENSPREP00000008027	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.693
LOC103469725	abcd4	ENSPREP00000029059	ENSPREP00000029396	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	ATP-binding cassette, sub-family D (ALD), member 4.	0.588
LOC103469725	gdap1l1	ENSPREP00000029059	ENSPREP00000030405	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	Ganglioside induced differentiation associated protein 1-like 1.	0.595
LOC103469725	pex12	ENSPREP00000029059	ENSPREP00000009322	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.754
LOC103469725	pex14	ENSPREP00000029059	ENSPREP00000023963	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	Peroxisomal biogenesis factor 14.	0.741
LOC103469725	pex16	ENSPREP00000029059	ENSPREP00000012233	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	Peroxisomal membrane protein PEX16.	0.687
LOC103469725	pex19	ENSPREP00000029059	ENSPREP00000001567	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	Peroxisomal biogenesis factor 19.	0.771
LOC103469725	pex3	ENSPREP00000029059	ENSPREP00000020654	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	Peroxisomal biogenesis factor 3.	0.736
abcd2	LOC103469725	ENSPREP00000011112	ENSPREP00000029059	ATP-binding cassette, sub-family D (ALD), member 2.	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	0.617
abcd2	abcd3	ENSPREP00000011112	ENSPREP00000008027	ATP-binding cassette, sub-family D (ALD), member 2.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.788
abcd2	abcd4	ENSPREP00000011112	ENSPREP00000029396	ATP-binding cassette, sub-family D (ALD), member 2.	ATP-binding cassette, sub-family D (ALD), member 4.	0.722
abcd2	atad1	ENSPREP00000011112	ENSPREP00000002374	ATP-binding cassette, sub-family D (ALD), member 2.	ATPase family AAA domain containing 1b; Belongs to the AAA ATPase family.	0.617
abcd2	gdap1l1	ENSPREP00000011112	ENSPREP00000030405	ATP-binding cassette, sub-family D (ALD), member 2.	Ganglioside induced differentiation associated protein 1-like 1.	0.537
abcd2	pex12	ENSPREP00000011112	ENSPREP00000009322	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.732
abcd2	pex14	ENSPREP00000011112	ENSPREP00000023963	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal biogenesis factor 14.	0.744
abcd2	pex16	ENSPREP00000011112	ENSPREP00000012233	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal membrane protein PEX16.	0.718
abcd2	pex19	ENSPREP00000011112	ENSPREP00000001567	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal biogenesis factor 19.	0.836
abcd2	pex3	ENSPREP00000011112	ENSPREP00000020654	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal biogenesis factor 3.	0.792
abcd3	LOC103469725	ENSPREP00000008027	ENSPREP00000029059	ATP-binding cassette, sub-family D (ALD), member 3a.	ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family.	0.693